PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG028688t1
Common NameTCM_028688
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 398aa    MW: 45777 Da    PI: 4.3359
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG028688t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.9e-16163247286
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       Wt++e+ +L++a  ++  + +r++l+   W++v+++++e  ++er+ +qC+++++ l+k+ykk+k++  + t  ++s+++yf++++
  Thecc1EG028688t1 163 WTERETFVLLDAWGDRFLQRGRKSLRSEEWQDVAERVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMLAE-TGATTSKWVYFRKMD 247
                       *************************************762678**************************9.577888********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-4161228IPR009057Homeodomain-like
PfamPF138379.5E-22162249No hitNo description
PROSITE profilePS500906.26163220IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDDIEDDARY PPNPYGVTHQ QGYGSLNRQK LPVRNAPYAR PIVNQYVDDD EDEEEEEDEE  60
DLGEEEENHN QNNGVRYVGK DMDDDDDDDE LDEDEDDDDE GGDKQKGYNR KSDEVDLERH  120
PKKRKLKSLV SSYEFAPRVP AAAVAATSVP KPSYGGRNSL TDWTERETFV LLDAWGDRFL  180
QRGRKSLRSE EWQDVAERVS EVSKIERTDT QCRNRLDTLK KKYKKEKAML AETGATTSKW  240
VYFRKMDMLM STPPQQGGLS CGLDSGEYVF MNPRVYLNRA NGLDEMRDSP ANSESADGEE  300
DISDGLPPKK RRFGRQSDEG SSFRLLADSI QKFSDIYEKI ENSKRQQMLE LEKMRMDFHR  360
ELEMQKRQIM ERAQAEIAKI QQGDDEENDV SAENASE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3134830.0KF313483.1 Firmiana danxiaensis microsatellite a7937_SSR23 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024104.10.0Alcohol dehydrogenase transcription factor Myb/SANT-like family protein
TrEMBLA0A061GAY60.0A0A061GAY6_THECC; Alcohol dehydrogenase transcription factor Myb/SANT-like family protein
STRINGVIT_09s0002g04700.t011e-170(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-72Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]